The Application of Fractal Transform and Entropy for Improving Fault Tolerance and Load Balancing in Grid Computing Environments

This paper applies the entropy-based fractal indexing scheme that enables the grid environment for fast indexing and querying. It addresses the issue of fault tolerance and load balancing-based fractal management to make computational grids more effective and reliable. A fractal dimension of a cloud of points gives an estimate of the intrinsic dimensionality of the data in that space. The main drawback of this technique is the long computing time. The main contribution of the suggested work is to investigate the effect of fractal transform by adding R-tree index structure-based entropy to existing grid computing models to obtain a balanced infrastructure with minimal fault. In this regard, the presented work is going to extend the commonly scheduling algorithms that are built based on the physical grid structure to a reduced logical network. The objective of this logical network is to reduce the searching in the grid paths according to arrival time rate and path’s bandwidth with respect to load balance and fault tolerance, respectively. Furthermore, an optimization searching technique is utilized to enhance the grid performance by investigating the optimum number of nodes extracted from the logical grid. The experimental results indicated that the proposed model has better execution time, throughput, makespan, latency, load balancing, and success rate.     

基于改进格林元的压裂水平井动态分析方法

以建立高效的动态分析方法为出发点，以边单元作为求解点，改进传统的格林元方法，减少未知数和求解矩阵维度；并提出基于改进格林元的加密网格加密方法，保证考虑复杂裂缝网络的压裂水平井动态模拟的早期精度.退化模型与半解析解、数值模拟结果进行对比，验证本文基于加密网格的改进格林元方法的准确性和动态分析的高效性.最后进行动态响应的敏感性分析，结果表明：①格林元方法是一种高精度的动态模拟方法，将求解节点设置在网格的边上可以提高压裂水平井动态模拟的速度；②改进格林元方法的加密基于叠加原理，不需要通过插值近似，其求解精度高.在相同加密网格条件下，基于本文改进格林元方法的加密效果比有限差分加密效果更佳；③复杂裂缝导流能力、改造区渗透率提高倍数、改造区大小等参数对压裂水平井动态特征影响较大，在动态分析和参数反演时，应着重考虑这些因素的影响.     

A new endocytic model based on the co-rotational grid method

Endocytosis plays important roles in many cellular physiological processes, such as metabolism and immune. Many theoretical models have been proposed to study the endocytic process, but little has considered the tensile deformation of the membrane and the actin forces. In this paper, a new endocytic model is proposed based on the co-rotational grid method. Our model gives a direct estimation of the in-plane strain of the plasma membrane and provides a basis for the calculation of further scission process of the vesicle. The results fit well with experimental data in the literature. Moreover, it is suggested that the active forces of actin at the endocytic site is the main mechanism driving the invagination of the plasma membrane.     

A study of properties of adaptive quadratic grids for three-dimensional near-surface field computations

Curved geometries and the corresponding near-surface fields typically require a large number of linear computational elements. High-order numerical solvers have been primarily used with low-order meshes. There is a need for curved, high-order computational elements. Typical near-surface meshes consist of hexahedral and/or prismatic elements. The present work studies the employment of quadratic meshes that are relatively coarse for field simulations. Directionally quadratic high-order elements are proposed for the near-surface field regions. The quadratic meshes are compared with the conventional low-order ones in terms of accuracy and efficiency. The cases considered include closed surface volume calculations, as well as computation of gradients of several analytic fields. A special method of adaptive local quadratic meshes is proposed and evaluated. Truncation error analysis for quadratic grids yields comparison with the conventional linear hexahedral/prismatic meshes, which are subject to typical distortions such as stretching, skewness, and torsion.     

HyperFLOW软件非结构网格亚跨声速湍流模拟的验证与确认

计算流体力学(computational fluid dynamics,CFD)数值模拟在航空航天等领域发挥越来越重要的作用,然而CFD数值模拟结果的可信度仍然需要通过不断地验证与确认来提高.本文给出了从制造解精度测试、简单到复杂外形湍流模拟网格收敛性研究等三个方面开展CFD软件验证与确认的方法,并对自主研发的CFD软件平台HyperFLOW在非结构网格上模拟亚跨声速湍流问题的能力进行了验证与确认.首先通过基于Euler方程和标量扩散方程的制造解精度测试,分别验证了HyperFLOW在非结构网格上对Euler方程和黏性项的求解精度,结果表明其能够在任意非结构网格上达到设计的二阶精度. 其次,通过NASATurbulence Modeling Resource中的湍流平板、二维翼型近尾迹流动、二维Bump等几个典型的亚声速湍流算例的网格收敛性研究,量化考察了数值结果的观测精度阶和网格收敛性指数,并与国外知名CFD解算器CFL3D,FUN3D的计算结果进行了对比,验证了HyperFLOW对简单湍流问题的模拟能力,且具有良好的网格收敛性和计算精度(阶). 最后,通过NASA CommonResearchModel标模定升力系数的网格收敛性研究和升阻极曲线预测,验证了软件在复杂外形亚跨声速湍流流动数值模拟中也具有良好的可信度.      

Logging damage and injured tree mortality in tropical forest management

Using insights from the forest ecology literature, we analyze the effect of injured trees on stand composition and carbon stored in above‐ground biomass and the implications for forest management decisions. Results from a Faustmann model with data for a tropical forest on Kalimantan show that up to 50% of the basal area of the stand before harvest can consist of injured trees. Considering injured trees leads to an increase in the amount of carbon in above‐ground biomass of up to 165%. These effects are larger under reduced impact logging than under conventional logging. The effects on land expectation value and cutting cycle are relatively small. The results suggest that considering injured trees in models for tropical forest management is important for the correct assessment of the potential of financial programs to store carbon and conserve forest ecosystem services in managed tropical forests, such as reducing emissions from deforestation and forest degradation and payment for ecosystem services. Recommendations for Resource Managers

• Considering the role of injured trees is important for managing tropical forests
• These trees can cover up to 50% of basal area and contain more than 50% of the carbon stored in above‐ground biomass
• Reduced impact logging leads to a larger basal area of injured trees and more carbon stored in injured trees than conventional logging
• Injured trees play an important role when assessing the potential for carbon storage in the context of payment for forest ecosystem services.

     

Mixed two‐grid finite difference methods for solving one‐dimensional and two‐dimensional Fitzhugh–Nagumo equations

The aim of this paper is to propose mixed two‐grid finite difference methods to obtain the numerical solution of the one‐dimensional and two‐dimensional Fitzhugh–Nagumo equations. The finite difference equations at all interior grid points form a large‐sparse linear system, which needs to be solved efficiently. The solution cost of this sparse linear system usually dominates the total cost of solving the discretized partial differential equation. The proposed method is based on applying a family of finite difference methods for discretizing the spatial and time derivatives. The obtained system has been solved by two‐grid method, where the two‐grid method is used for solving the large‐sparse linear systems. Also, in the proposed method, the spectral radius with local Fourier analysis is calculated for different values of h and Δt. The numerical examples show the efficiency of this algorithm for solving the one‐dimensional and two‐dimensional Fitzhugh–Nagumo equations. Copyright © 2016 John Wiley & Sons, Ltd.     

Global dynamics of an age‐structured virus model with saturation effects

An infection‐age virus dynamics model for human immunodeficiency virus (or hepatitis B virus) infections with saturation effects of infection rate and immune response is investigated in this paper. It is shown that the global dynamics of the model is completely determined by two critical values R ₀, the basic reproductive number for viral infection, and R ₁, the viral reproductive number at the immune‐free infection steady state (R ₁<R ₀). If R ₀<1, the uninfected steady state E ⁰ is globally asymptotically stable; if R ₀>1 > R ₁, the immune‐free infected steady state E ^? is globally asymptotically stable; while if R ₁>1, the antibody immune infected steady state is globally asymptotically stable. Moreover, our results show that ignoring the saturation effects of antibody immune response or infection rate will result in an overestimate of the antibody immune reproductive number. Copyright © 2016 John Wiley & Sons, Ltd.     

Local and parallel finite element algorithm for stationary incompressible magnetohydrodynamics

This article presents a local and parallel finite element method for the stationary incompressible magnetohydrodynamics problem. The key idea of this algorithm comes from the two‐grid discretization technique. Specifically, we solve the nonlinear system on a global coarse mesh, and then solve a series of linear problems on several subdomains in parallel. Furthermore, local a priori estimates are obtained on a general shape regular grid. The efficiency of the algorithm is also illustrated by some numerical experiments.© 2017 Wiley Periodicals, Inc. Numer Methods Partial Differential Eq 33: 1513–1539, 2017